Dexuan Xie: search on Z-Library

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1

New solution decomposition and minimization schemes for Poisson–Boltzmann equation in calculation of biomolecular electrostatics

Journal:

Journal of Computational Physics

Year:

2014

Language:

english

File:

PDF, 2.23 MB

english, 2014

2

Preconditioners for nonsymmetric indefinite linear systems

Chao, Zhen, Xie, Dexuan, Sameh, Ahmed H.

Journal:

Journal of Computational and Applied Mathematics

Year:

2020

Language:

english

File:

PDF, 2.07 MB

english, 2020

3

Convergence analysis of truncated incomplete Hessian Newton minimization method and application in

Dexuan Xie, Mazen G. Zarrouk

Journal:

Computational Optimization and Applications

Year:

2011

Language:

english

File:

PDF, 986 KB

english, 2011

4

Altered superatomic properties of U@C28 by the electron rearrangement via adatom defects

Xu, Dexuan, Xie, Weiyu, Gao, Yang, Jiang, Wanrun, Wang, Zhigang

Journal:

Chemical Physics Letters

Year:

2018

Language:

english

File:

PDF, 1.24 MB

english, 2018

5

Perillyl alcohol protects human renal tubular epithelial cells from hypoxia/reoxygenation injury via inhibition of ROS, endoplasmic reticulum stress and activation of PI3K/Akt/eNOS pathway

Xu, Yixiao, Wang, Wantie, Jin, Keke, Zhu, Qifan, Lin, Hongzhou, Xie, Minye, Wang, Dexuan

Journal:

Biomedicine & Pharmacotherapy

Year:

2017

Language:

english

File:

PDF, 1.11 MB

english, 2017

6

A molecular dynamics model of the Bt toxin Cyt1A and its validation by resonance energy transfer

Xiaochuan Li, Kerrick J. Nevels, Zygmunt Gryczynski, Ignacy Gryczynski, Marianne Pusztai-Carey, Dexuan Xie, Peter Butko

Journal:

Biophysical Chemistry

Year:

2009

Language:

english

File:

PDF, 1.44 MB

english, 2009

7

Efficient Algorithms for a Nonlocal Dielectric Model for Protein in Ionic Solvent

Xie, Dexuan, Jiang, Yi, Scott, L. Ridgway

Journal:

SIAM Journal on Scientific Computing

Year:

2013

Language:

english

File:

PDF, 1.52 MB

english, 2013

8

A More Lenient Stopping Rule for Line Search Algorithms

Xie, Dexuan, Schlick, Tamar

Journal:

Optimization Methods and Software

Year:

2002

Language:

english

File:

PDF, 193 KB

english, 2002

9

A nonlocal modified Poisson–Boltzmann equation and finite element solver for computing electrostatics of biomolecules

Xie, Dexuan, Jiang, Yi

Journal:

Journal of Computational Physics

Year:

2016

Language:

english

File:

PDF, 1.03 MB

english, 2016

10

A Fast Solver for a Nonlocal Dielectric Continuum Model

Xie, Dexuan, Jiang, Yi, Brune, Peter, Scott, L. Ridgway

Journal:

SIAM Journal on Scientific Computing

Year:

2012

Language:

english

File:

PDF, 1008 KB

english, 2012

11

A new analysis of electrostatic free energy minimization and Poisson–Boltzmann equation for protein in ionic solvent

Xie, Dexuan, Li, Jiao

Journal:

Nonlinear Analysis: Real World Applications

Year:

2015

Language:

english

File:

PDF, 467 KB

english, 2015

12

Integrated Computational Model of Lung Tissue Bioenergetics

Zhang, Xiao, Dash, Ranjan K., Clough, Anne, Xie, Dexuan, Jacobs, Elizabeth, Audi, Said

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 58 KB

english, 2019

13

A finite element iterative solver for a PNP ion channel model with Neumann boundary condition and membrane surface charge

Xie, Dexuan, Chao, Zhen

Journal:

Journal of Computational Physics

Year:

2020

File:

PDF, 3.66 MB

2020

14

A Modified Nonlocal Continuum Electrostatic Model for Protein in Water and Its Analytical Solutions for Ionic Born Models

Xie, Dexuan, Volkmer, Hans W.

Journal:

Communications in Computational Physics

Year:

2013

Language:

english

File:

PDF, 205 KB

english, 2013

15

Sequential gene activation and gene imprinting during early embryo development in maize

Meng, Dexuan, Zhao, Jianyu, Zhao, Cheng, Luo, Haishan, Xie, Mujiao, Liu, Renyi, Lai, Jinsheng, Zhang, Xiaolan, Jin, Weiwei

Journal:

The Plant Journal

Year:

2017

Language:

english

File:

PDF, 1.28 MB

english, 2017

16

[IEEE Workshops on Mobile and Wireless Networking/High Performance Scientific, Engineering Computing/Network Design and Architecture/Optical Networks Control and Management/Ad Hoc and Sensor Networks/Compile and Run Time Techniques for Parallel Computing ICPP 2004 - Montreal, QC, Canada (15-18 Aug. 2004)] Workshops on Mobile and Wireless Networking/High Performance Scientific, Engineering Computing/Network Design and Architecture/Optical Networks Control and Management/Ad Hoc and Sensor Networks/Compile and Run Time Techniques for Parallel Computing ICPP 2004 - New block parallel SOR methods by multi-type partitions

Year:

2004

Language:

english

File:

PDF, 373 KB

english, 2004

17

Bio-Based Radish@PDA/PEG Sandwich Composite with High Efficiency Solar Thermal Energy Storage

Xie, Yuhui, Li, Weijie, Huang, Haowei, Dong, Dexuan, Zhang, Xinya, Zhang, Li, Chen, Ying, Sheng, Xinxin, Lu, Xiang

Journal:

ACS Sustainable Chemistry & Engineering

Year:

2020

File:

PDF, 1.36 MB

2020

18

An improved algorithm and its parallel implementation for solving a general blood-tissue transport and metabolism model

Dexuan Xie, Ranjan K. Dash, Daniel A. Beard

Journal:

Journal of Computational Physics

Year:

2009

Language:

english

File:

PDF, 579 KB

english, 2009

19

A new minimization protocol for solving nonlinear Poisson–Boltzmann mortar finite element equation

Dexuan Xie, Shuzi Zhou

Journal:

BIT Numerical Mathematics

Year:

2007

Language:

english

File:

PDF, 738 KB

english, 2007

20

Remark on Algorithm 702mdash;the updated truncated Newton minimization package

Xie, Dexuan, Schlick, Tamar

Journal:

ACM Transactions on Mathematical Software

Year:

1999

Language:

english

File:

PDF, 118 KB

english, 1999

21

Study of local and nonlocal Poisson–Boltzmann equations for linear and nonlinear models with spherical symmetry

Volkmer, Hans W., Xie, Dexuan

Journal:

Journal of Computational and Applied Mathematics

Year:

2018

File:

PDF, 357 KB

2018

22

An accelerated nonlocal Poisson-Boltzmann equation solver for electrostatics of biomolecule

Ying, Jinyong, Xie, Dexuan

Journal:

International Journal for Numerical Methods in Biomedical Engineering

Year:

2018

Language:

english

File:

PDF, 501 KB

english, 2018

23

An improved approximate Newton method for implicit Runge–Kutta formulas

Journal:

Journal of Computational and Applied Mathematics

Year:

2011

Language:

english

File:

PDF, 345 KB

english, 2011

24

A Rapid, Accurate and Machine-agnostic Segmentation and Quantification Method for CT-based COVID-19 Diagnosis

Zhou, Longxi, Li, Zhongxiao, Zhou, Juexiao, Li, Haoyang, Chen, Yupeng, Huang, Yuxin, Xie, Dexuan, Zhao, Lintao, Fan, Ming, Hashmi, Shahrukh, AbdelKareem, Faisal, Eiada, Riham, Xiao, Xigang, Li, Lihua,

Journal:

IEEE Transactions on Medical Imaging

Year:

2020

File:

PDF, 1.42 MB

2020

25

A New Block Parallel SOR Method and Its Analysis

Journal:

SIAM Journal on Scientific Computing

Year:

2006

Language:

english

File:

PDF, 445 KB

english, 2006

26

A new box iterative method for a class of nonlinear interface problems with application in solving Poisson–Boltzmann equation

Xie, Dexuan, Ying, Jinyong

Journal:

Journal of Computational and Applied Mathematics

Year:

2016

Language:

english

File:

PDF, 1.98 MB

english, 2016

27

Analytical solutions of nonlocal Poisson dielectric models with multiple point charges inside a dielectric sphere

Xie, Dexuan, Volkmer, Hans W., Ying, Jinyong

Journal:

Physical Review E

Year:

2016

Language:

english

File:

PDF, 1.10 MB

english, 2016

28

A Poisson-Boltzmann Equation Test Model for Protein in Spherical Solute Region and its Applications

Jiang, Yi, Ying, Jinyong, Xie, Dexuan

Journal:

Molecular Based Mathematical Biology

Year:

2014

Language:

english

File:

PDF, 6.63 MB

english, 2014

29

Study of local and nonlocal Poisson–Boltzmann equations for linear and nonlinear models with spherical symmetry

Volkmer, Hans W., Xie, Dexuan

Journal:

Journal of Computational and Applied Mathematics

Year:

2018

Language:

english

File:

PDF, 357 KB

english, 2018

30

Preconditioners for nonsymmetric indefinite linear systems

Chao, Zhen, Xie, Dexuan, Sameh, Ahmed H.

Journal:

Journal of Computational and Applied Mathematics

Year:

2020

File:

PDF, 2.07 MB

2020

31

An incomplete Hessian Newton minimization method and its application in a chemical database problem

Dexuan Xie, Qin Ni

Journal:

Computational Optimization and Applications

Year:

2009

Language:

english

File:

PDF, 1.71 MB

english, 2009

32

Efficient Implementation of the Truncated-Newton Algorithm for Large-Scale Chemistry Applications

Xie, Dexuan, Schlick, Tamar

Journal:

SIAM Journal on Optimization

Year:

1999

Language:

english

File:

PDF, 596 KB

english, 1999

33

A new boundary integral equation for molecular electrostatics with charges over whole space

Dexuan Xie, L. Ridgway Scott

Journal:

BIT Numerical Mathematics

Year:

2011

Language:

english

File:

PDF, 798 KB

english, 2011

34

SDPBS Web Server for Calculation of Electrostatics of Ionic Solvated Biomolecules

Jiang, Yi, Xie, Yang, Ying, Jinyong, Xie, Dexuan, Yu, Zeyun

Journal:

Computational and Mathematical Biophysics

Year:

2015

Language:

english

File:

PDF, 1.01 MB

english, 2015

35

Aerosol-induced changes in sky polarization pattern: potential hint on applications in polarimetric remote sensing

Chen, Wei, Bai, Shuang, Wang, Dexuan, Zhao, Haimeng, Sun, Hao, Yi, Lina, Zhao, Hengqian, Xie, Donghui, Peltoniemi, Jouni, Li, Zhanqing

Journal:

International Journal of Remote Sensing

Year:

2019

File:

PDF, 2.70 MB

2019

36

Principal component analysis combined with truncated-Newton minimization for dimensionality reduction of chemical databases

Dexuan Xie, Suresh B. Singh, Eugene M. Fluder, Tamar Schlick

Journal:

Mathematical Programming

Year:

2003

Language:

english

File:

PDF, 604 KB

english, 2003

37

Integrated Computational Model of Lung Tissue Bioenergetics

Zhang, Xiao, Dash, Ranjan K., Clough, Anne, Xie, Dexuan, Jacobs, Elizabeth, Audi, Said

Journal:

Biophysical Journal

Year:

2019

File:

PDF, 58 KB

2019

38

Incorporation of boron nitride nanosheets in zinc phosphate coatings on mild steel to enhance corrosion resistance

Huang, Haowei, Wang, Huihui, Xie, Yuhui, Dong, Dexuan, Jiang, Xiang, Zhang, Xinya

Journal:

Surface and Coatings Technology

Year:

2019

Language:

english

File:

PDF, 1.95 MB

english, 2019

39

A size‐modified poisson–boltzmann ion channel model in a solvent of multiple ionic species: Application to voltage‐dependent anion channel

Xie, Dexuan, Audi, Said H., Dash, Ranjan K.

Journal:

Journal of Computational Chemistry

Year:

2019

Language:

english

File:

PDF, 6.32 MB

english, 2019

40

Incorporation of boron nitride nanosheets in zinc phosphate coatings on mild steel to enhance corrosion resistance

Huang, Haowei, Wang, Huihui, Xie, Yuhui, Dong, Dexuan, Jiang, Xiang, Zhang, Xinya

Journal:

Surface and Coatings Technology

Year:

2019

File:

PDF, 1.95 MB

2019

41

New parallel symmetric SOR preconditioners by multi-type partitioning

Journal:

International Journal of Computer Mathematics

Year:

2009

Language:

english

File:

PDF, 550 KB

english, 2009

42

A new finite element and finite difference hybrid method for computing electrostatics of ionic solvated biomolecule

Ying, Jinyong, Xie, Dexuan

Journal:

Journal of Computational Physics

Year:

2015

Language:

english

File:

PDF, 2.38 MB

english, 2015

43

Analysis of a Class of Parallel Multigrid Smoothers

Journal:

BIT Numerical Mathematics

Year:

2004

Language:

english

File:

PDF, 715 KB

english, 2004

44

Nonlocal Poisson-Fermi model for ionic solvent

Xie, Dexuan, Liu, Jinn-Liang, Eisenberg, Bob

Journal:

Physical Review E

Year:

2016

Language:

english

File:

PDF, 375 KB

english, 2016

45

Poisson-Fermi Formulation of Nonlocal Electrostatics in Electrolyte Solutions

Liu, Jinn-Liang, Xie, Dexuan, Eisenberg, Bob

Journal:

Computational and Mathematical Biophysics

Year:

2017

Language:

english

File:

PDF, 458 KB

english, 2017

46

New Parallel SOR Method by Domain Partitioning

Xie, Dexuan, Adams, Loyce

Journal:

SIAM Journal on Scientific Computing

Year:

1999

Language:

english

File:

PDF, 434 KB

english, 1999

47

SMPBS: Web server for computing biomolecular electrostatics using finite element solvers of size modified Poisson-Boltzmann equation

Xie, Yang, Ying, Jinyong, Xie, Dexuan

Journal:

Journal of Computational Chemistry

Year:

2017

Language:

english

File:

PDF, 888 KB

english, 2017

48

A hybrid solver of size modified Poisson–Boltzmann equation by domain decomposition, finite element, and finite difference

Ying, Jinyong, Xie, Dexuan

Journal:

Applied Mathematical Modelling

Year:

2017

Language:

english

File:

PDF, 1.59 MB

english, 2017

49

Nonlocal Poisson-Fermi double-layer models: Effects of nonuniform ion sizes on double-layer structure

Xie, Dexuan, Jiang, Yi

Journal:

Physical Review E

Year:

2018

Language:

english

File:

PDF, 3.41 MB

english, 2018

50

An On-Demand Service for Managing and Analyzing Arctic Sea Ice High Spatial Resolution Imagery

Sha, Dexuan, Miao, Xin, Xu, Mengchao, Yang, Chaowei, Xie, Hongjie, Mestas-NuÃ±ez, Alberto M., Li, Yun, Liu, Qian, Yang, Jingchao

Journal:

Year:

2020

File:

PDF, 3.32 MB

2020

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